function spm_normalise_disp(matname,VF) % Display results of spatial normalisation % FORMAT spm_normalise_disp(matname) % matname - name of parameter file *_sn.mat %__________________________________________________________________________ % Copyright (C) 2002-2011 Wellcome Trust Centre for Neuroimaging % John Ashburner % $Id: spm_normalise_disp.m 4873 2012-08-30 19:06:26Z john $ fg = spm_figure('FindWin','Graphics'); if isempty(fg), return; end if nargin<1, matname = spm_select(1,'.*_sn.mat$','Select parameter file'); end if ischar(matname) t = load(deblank(matname)); else t = matname; end if nargin<2, VF = t.VF(1); end Q = t.VG(1).mat*inv(t.Affine)/VF.mat; spm_figure('Clear','Graphics'); ax=axes('Position',[0.1 0.51 0.8 0.45],'Visible','off','Parent',fg); text(0,0.90, 'Spatial Normalisation','FontSize',16,'FontWeight','Bold',... 'Interpreter','none','Parent',ax); text(0,0.75, [ 'Image : ' VF.fname],'FontSize',12,'FontWeight','Bold',... 'Interpreter','none','Parent',ax); %text(0,0.7, [ 'Parameters : ' spm_file(matname,'basename')],'FontSize',12,... % 'Interpreter','none','Parent',ax); %str = 'no flipping'; %if det(t.Affine(1:3,1:3))<0, str = 'image flipped'; end; text(0,0.6, 'Linear {affine} component','FontWeight','Bold',... 'Interpreter','none','Parent',ax); text(0,0.55, sprintf('X1 = %0.3f*X %+0.3f*Y %+0.3f*Z %+0.3f',Q(1,:)),... 'Interpreter','none','Parent',ax); text(0,0.50, sprintf('Y1 = %0.3f*X %+0.3f*Y %+0.3f*Z %+0.3f',Q(2,:)),... 'Interpreter','none','Parent',ax); text(0,0.45, sprintf('Z1 = %0.3f*X %+0.3f*Y %+0.3f*Z %+0.3f',Q(3,:)),... 'Interpreter','none','Parent',ax); d = [size(t.Tr) 1 1 1]; d = d(1:3); if prod(d)>1 && isfinite(t.flags.reg) text(0,0.35, sprintf('%d nonlinear iterations',t.flags.nits),... 'Interpreter','none','Parent',ax); text(0,0.30, sprintf('%d x %d x %d basis functions',d),... 'Interpreter','none','Parent',ax); else text(0,0.35, 'No nonlinear components',... 'Interpreter','none','Parent',ax); end spm_orthviews('Reset'); spm_orthviews('Image',t.VG(1).fname,[0.01 0.1 .48 .6]); VN = spm_write_sn(VF,matname); h2 = spm_orthviews('Image',VN,[.51 0.1 .48 .6]); spm_orthviews('Space',h2); spm_print; drawnow;