function [y] = spm_gx_fmri_linear(x,u,P,M) % Simulated BOLD response to input (linear version) % FORMAT [y] = spm_gx_fmri_linear(x,u,P,M) % y - BOLD response (%) % x - state vector (see spm_fx_fmri) % P - Parameter vector (see spm_fx_fmri) % M - model specification structure (see spm_nlsi) %__________________________________________________________________________ % % This function implements the BOLD signal model described in: % % Stephan KE, Weiskopf N, Drysdale PM, Robinson PA, Friston KJ (2007) % Comparing hemodynamic models with DCM. NeuroImage 38: 387-401. %__________________________________________________________________________ % Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging % Karl Friston & Klaas Enno Stephan % $Id: spm_gx_fmri_linear.m 6262 2014-11-17 13:47:56Z karl $ % Biophysical constants for 1.5T %========================================================================== % time to echo (TE) (default 0.04 sec) %-------------------------------------------------------------------------- try, TE = M.TE; catch, TE = 0.04; end % resting venous volume (%) %-------------------------------------------------------------------------- V0 = 4; % estimated region-specific ratios of intra- to extra-vascular signal %-------------------------------------------------------------------------- ep = 1*exp(P.epsilon); % slope r0 of intravascular relaxation rate R_iv as a function of oxygen % saturation S: R_iv = r0*[(1 - S)-(1 - S0)] (Hz) %-------------------------------------------------------------------------- r0 = 25; % frequency offset at the outer surface of magnetized vessels (Hz) %-------------------------------------------------------------------------- nu0 = 40.3; % resting oxygen extraction fraction %-------------------------------------------------------------------------- E0 = 0.4; %-Coefficients in BOLD signal model %========================================================================== k1 = 4.3*nu0*E0*TE; k2 = ep*r0*E0*TE; k3 = 1 - ep; %-Output equation of BOLD signal model %========================================================================== v = x(:,4) + 1; q = x(:,5) + 1; y = V0*((k1 + k2).*(1 - q) + (k3 - k2).*(1 - v));